J3_6R6G_009
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|U|2181, 6R6G|1|5|A|2182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_009 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.266
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|5|G|1795
6R6G|1|5|A|1796
6R6G|1|5|A|1797
6R6G|1|5|G|1798
*
6R6G|1|5|C|2178
6R6G|1|5|C|2179
6R6G|1|5|A|2180
6R6G|1|5|U|2181
6R6G|1|5|A|2182
6R6G|1|5|U|2183
6R6G|1|5|C|2184
*
6R6G|1|5|G|2193
6R6G|1|5|U|2194
6R6G|1|5|C|2195
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain g
- eL34
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: