J3_6R6G_014
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6R6G|1|5|C|2693, 6R6G|1|5|U|2694, 6R6G|1|5|U|2695, 6R6G|1|5|C|2696, 6R6G|1|5|U|2697, 6R6G|1|5|G|2698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_014 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.2888
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|G|2673
6R6G|1|5|G|2674
6R6G|1|5|G|2675
6R6G|1|5|G|2676
*
6R6G|1|5|C|2691
6R6G|1|5|G|2692
6R6G|1|5|C|2693
6R6G|1|5|U|2694
6R6G|1|5|U|2695
6R6G|1|5|C|2696
6R6G|1|5|U|2697
6R6G|1|5|G|2698
6R6G|1|5|G|2699
6R6G|1|5|C|2700
6R6G|1|5|G|2701
6R6G|1|5|C|2702
6R6G|1|5|C|2703
6R6G|1|5|A|2704
6R6G|1|5|A|2705
6R6G|1|5|G|2706
*
6R6G|1|5|C|2725
6R6G|1|5|G|2726
6R6G|1|5|A|2727
6R6G|1|5|C|2728
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- ribosomal protein eL43
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