J3_6R6G_016
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|A|3034, 6R6G|1|5|U|3035
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_016 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.1704
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|U|3033
6R6G|1|5|A|3034
6R6G|1|5|U|3035
6R6G|1|5|C|3036
*
6R6G|1|5|G|3061
6R6G|1|5|U|3062
6R6G|1|5|U|3063
*
6R6G|1|5|A|3077
6R6G|1|5|C|3078
6R6G|1|5|U|3079
6R6G|1|5|A|3080
6R6G|1|5|A|3081
6R6G|1|5|U|3082
6R6G|1|5|A|3083
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain O
- 60S ribosomal protein L13a
- Chain V
- eL14
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