3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
6R6G|1|5|A|3034, 6R6G|1|5|U|3035
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6R6G_016 not in the Motif Atlas
Homologous match to J3_8C3A_011
Geometric discrepancy: 0.1704
The information below is about J3_8C3A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

6R6G|1|5|U|3033
6R6G|1|5|A|3034
6R6G|1|5|U|3035
6R6G|1|5|C|3036
*
6R6G|1|5|G|3061
6R6G|1|5|U|3062
6R6G|1|5|U|3063
*
6R6G|1|5|A|3077
6R6G|1|5|C|3078
6R6G|1|5|U|3079
6R6G|1|5|A|3080
6R6G|1|5|A|3081
6R6G|1|5|U|3082
6R6G|1|5|A|3083

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain O
60S ribosomal protein L13a
Chain V
eL14

Coloring options:


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