J3_6R6G_018

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

6R6G|1|7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_018 not in the Motif Atlas

Homologous match to J3_5TBW_045

Geometric discrepancy: 0.1201

The information below is about J3_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6R6G|1|7|C|9
6R6G|1|7|C|10
6R6G|1|7|A|11
6R6G|1|7|U|12
6R6G|1|7|A|13
6R6G|1|7|C|14
*
6R6G|1|7|G|65
6R6G|1|7|G|66
*
6R6G|1|7|U|109
6R6G|1|7|G|110

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S ribosomal protein L5

Chain I

Ribosomal protein L10 (Predicted)

Chain T

eL21