J3_6R6G_021

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GCCUAAGG*CG

Length

12 nucleotides

Bulged bases

6R6G|1|AF|C|169, 6R6G|1|AF|A|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_021 not in the Motif Atlas

Geometric match to J3_1MFQ_002

Geometric discrepancy: 0.2927

The information below is about J3_1MFQ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70599.1

Basepair signature

cWW-F-cWW-F-F-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6R6G|1|AF|U|128
6R6G|1|AF|C|129
*
6R6G|1|AF|G|168
6R6G|1|AF|C|169
6R6G|1|AF|C|170
6R6G|1|AF|U|171
6R6G|1|AF|A|172
6R6G|1|AF|A|173
6R6G|1|AF|G|174
6R6G|1|AF|G|175
*
6R6G|1|AF|C|221
6R6G|1|AF|G|222

Current chains

Chain AF

7S RNA

Nearby chains

Chain AI

Signal recognition particle subunit SRP68