J3_6R6G_024

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_024 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2503

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6R6G|1|K|A|816
6R6G|1|K|G|817
6R6G|1|K|A|818
6R6G|1|K|G|819
*
6R6G|1|K|C|829
6R6G|1|K|A|830
6R6G|1|K|G|831
*
6R6G|1|K|C|843
6R6G|1|K|U|844
6R6G|1|K|G|845
6R6G|1|K|G|846
6R6G|1|K|A|847
6R6G|1|K|U|848

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain NN

40S ribosomal protein S24

Chain x

40S ribosomal protein S4