J3_6R6G_042

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6R6G|1|K|A|45, 6R6G|1|K|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6G_042 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1142

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

6R6G|1|K|A|40
6R6G|1|K|G|41
6R6G|1|K|A|42
6R6G|1|K|U|43
6R6G|1|K|U|44
6R6G|1|K|A|45
6R6G|1|K|A|46
6R6G|1|K|G|47
*
6R6G|1|K|C|479
6R6G|1|K|G|480
6R6G|1|K|C|481
6R6G|1|K|G|482
6R6G|1|K|C|483
6R6G|1|K|A|484
6R6G|1|K|A|485
6R6G|1|K|A|486
6R6G|1|K|U|487
*
6R6G|1|K|A|512
6R6G|1|K|G|513
6R6G|1|K|U|514

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain AE

Signal recognition particle 14 kDa protein

Chain DD

Ribosomal protein S9 (Predicted)

Chain VV

Ribosomal protein S23