J3_6R6P_007
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGAAG*CGUGG
- Length
- 12 nucleotides
- Bulged bases
- 6R6P|1|5|A|1805, 6R6P|1|5|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6P_007 not in the Motif Atlas
- Homologous match to J3_9PN5_010
- Geometric discrepancy: 0.3961
- The information below is about J3_9PN5_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_22278.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6R6P|1|5|U|1726
6R6P|1|5|U|1727
*
6R6P|1|5|A|1802
6R6P|1|5|G|1803
6R6P|1|5|A|1804
6R6P|1|5|A|1805
6R6P|1|5|G|1806
*
6R6P|1|5|C|1832
6R6P|1|5|G|1833
6R6P|1|5|U|1834
6R6P|1|5|G|1835
6R6P|1|5|G|1836
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain F
- uL30
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
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