J3_6R6P_017

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6R6P|1|5|A|4464, 6R6P|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6P_017 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1151

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6R6P|1|5|U|4463
6R6P|1|5|A|4464
6R6P|1|5|U|4465
6R6P|1|5|C|4466
*
6R6P|1|5|G|4491
6R6P|1|5|U|4492
6R6P|1|5|U|4493
*
6R6P|1|5|A|4507
6R6P|1|5|C|4508
6R6P|1|5|U|4509
6R6P|1|5|A|4510
6R6P|1|5|A|4511
6R6P|1|5|U|4512
6R6P|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14