J3_6R6P_029

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6R6P|1|K|G|1507, 6R6P|1|K|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R6P_029 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1814

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6R6P|1|K|C|1272
6R6P|1|K|C|1273
6R6P|1|K|G|1274
6R6P|1|K|G|1275
6R6P|1|K|A|1276
6R6P|1|K|C|1277
*
6R6P|1|K|G|1320
6R6P|1|K|G|1321
6R6P|1|K|G|1322
6R6P|1|K|U|1323
6R6P|1|K|G|1324
*
6R6P|1|K|U|1504
6R6P|1|K|U|1505
6R6P|1|K|A|1506
6R6P|1|K|G|1507
6R6P|1|K|A|1508
6R6P|1|K|U|1509
6R6P|1|K|G|1510

Current chains

Chain K

18S rRNA

Nearby chains

Chain 0

eS31

Chain SS

eS10

Chain w

S29