J3_6R87_008
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 6R87|1|1|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R87_008 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.0991
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
6R87|1|1|U|1479
6R87|1|1|G|1480
6R87|1|1|A|1481
6R87|1|1|A|1482
6R87|1|1|G|1483
6R87|1|1|U|1484
6R87|1|1|G|1485
*
6R87|1|1|C|1857
6R87|1|1|A|1858
6R87|1|1|A|1859
*
6R87|1|1|U|1871
6R87|1|1|C|1872
6R87|1|1|U|1873
6R87|1|1|A|1874
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L19-A
- Chain i
- 60S ribosomal protein L34-A
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