J3_6RBD_006
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6RBD_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1759
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6RBD|1|2|C|1161
6RBD|1|2|C|1162
6RBD|1|2|A|1163
6RBD|1|2|G|1164
*
6RBD|1|2|C|1581
6RBD|1|2|U|1582
6RBD|1|2|A|1583
6RBD|1|2|G|1584
6RBD|1|2|U|1585
6RBD|1|2|A|1586
6RBD|1|2|A|1587
*
6RBD|1|2|U|1609
6RBD|1|2|G|1610
6RBD|1|2|A|1611
6RBD|1|2|U|1612
6RBD|1|2|U|1613
6RBD|1|2|A|1614
6RBD|1|2|C|1615
6RBD|1|2|G|1616
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16-A
- Chain c
- 40S ribosomal protein S28-A
Coloring options: