J3_6RBE_002

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUCAG*CUAACUACUG*CAUUU

Length

20 nucleotides

Bulged bases

6RBE|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RBE_002 not in the Motif Atlas

Homologous match to J3_8C3A_036

Geometric discrepancy: 0.1785

The information below is about J3_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08408.1

Basepair signature

cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6RBE|1|2|A|881
6RBE|1|2|U|882
6RBE|1|2|C|883
6RBE|1|2|A|884
6RBE|1|2|G|885
*
6RBE|1|2|C|927
6RBE|1|2|U|928
6RBE|1|2|A|929
6RBE|1|2|A|930
6RBE|1|2|C|931
6RBE|1|2|U|932
6RBE|1|2|A|933
6RBE|1|2|C|934
6RBE|1|2|U|935
6RBE|1|2|G|936
*
6RBE|1|2|C|943
6RBE|1|2|A|944
6RBE|1|2|U|945
6RBE|1|2|U|946
6RBE|1|2|U|947

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain N

40S ribosomal protein S13

Chain O

40S ribosomal protein S14-A