J3_6RM3_005

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAG*CUAUAC*GUG

Length

13 nucleotides

Bulged bases

6RM3|1|L50|U|1378, 6RM3|1|L50|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6RM3_005 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.325

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6RM3|1|L50|C|1156
6RM3|1|L50|U|1157
6RM3|1|L50|A|1158
6RM3|1|L50|G|1159
*
6RM3|1|L50|C|1375
6RM3|1|L50|U|1376
6RM3|1|L50|A|1377
6RM3|1|L50|U|1378
6RM3|1|L50|A|1379
6RM3|1|L50|C|1380
*
6RM3|1|L50|G|1389
6RM3|1|L50|U|1390
6RM3|1|L50|G|1391

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LGG

eL34

Chain LJJ

eL37

Chain LLL

eL39