J3_6S05_018
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6S05|1|A|A|398, 6S05|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S05_018 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1149
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6S05|1|A|A|369
6S05|1|A|U|370
6S05|1|A|G|371
6S05|1|A|A|372
6S05|1|A|A|373
6S05|1|A|A|374
6S05|1|A|A|375
6S05|1|A|G|376
6S05|1|A|A|377
6S05|1|A|A|378
6S05|1|A|C|379
*
6S05|1|A|G|390
6S05|1|A|A|391
6S05|1|A|G|392
6S05|1|A|U|393
6S05|1|A|G|394
6S05|1|A|A|395
6S05|1|A|A|396
6S05|1|A|A|397
6S05|1|A|A|398
6S05|1|A|A|399
6S05|1|A|G|400
6S05|1|A|U|401
6S05|1|A|A|402
6S05|1|A|C|403
6S05|1|A|G|404
*
6S05|1|y|C|19
6S05|1|y|U|20
Current chains
- Chain A
- 25S ribosomal RNA
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain U
- 60S ribosomal protein L17-A
- Chain X
- 60S ribosomal protein L26-A
- Chain k
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
Coloring options: