J3_6S05_026
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6S05|1|A|C|2760, 6S05|1|A|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S05_026 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1127
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6S05|1|A|G|2651
6S05|1|A|U|2652
6S05|1|A|C|2653
*
6S05|1|A|G|2754
6S05|1|A|C|2755
6S05|1|A|C|2756
6S05|1|A|U|2757
6S05|1|A|A|2758
6S05|1|A|U|2759
6S05|1|A|C|2760
6S05|1|A|G|2761
6S05|1|A|A|2762
6S05|1|A|U|2763
6S05|1|A|C|2764
6S05|1|A|C|2765
*
6S05|1|A|G|2793
6S05|1|A|G|2794
6S05|1|A|U|2795
6S05|1|A|G|2796
6S05|1|A|C|2797
6S05|1|A|C|2798
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L28
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain l
- 60S ribosomal protein L42-A
- Chain w
- 60S ribosomal export protein NMD3
Coloring options: