J3_6S0K_017

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S0K_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0743

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6S0K|1|A|G|1424
6S0K|1|A|G|1425
6S0K|1|A|G|1426
6S0K|1|A|A|1427
6S0K|1|A|C|1428
6S0K|1|A|G|1429
*
6S0K|1|A|C|1564
6S0K|1|A|C|1565
*
6S0K|1|A|G|1568
6S0K|1|A|A|1569
6S0K|1|A|A|1570
6S0K|1|A|A|1571
6S0K|1|A|A|1572
6S0K|1|A|G|1573
6S0K|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2