J3_6S12_007

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6S12|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S12_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.3234

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6S12|1|A|C|1342
6S12|1|A|U|1343
6S12|1|A|A|1344
6S12|1|A|A|1345
6S12|1|A|G|1346
*
6S12|1|A|C|1649
6S12|1|A|G|1650
6S12|1|A|C|1651
6S12|1|A|A|1652
6S12|1|A|A|1653
6S12|1|A|A|1654
6S12|1|A|C|1655
*
6S12|1|A|G|1664
6S12|1|A|U|1665
6S12|1|A|A|1666
6S12|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34