J3_6S12_010

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6S12|1|A|A|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S12_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1515

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6S12|1|A|C|2544
6S12|1|A|A|2545
6S12|1|A|U|2546
6S12|1|A|C|2547
*
6S12|1|A|G|2572
6S12|1|A|U|2573
6S12|1|A|U|2574
*
6S12|1|A|A|2588
6S12|1|A|U|2589
6S12|1|A|U|2590
6S12|1|A|A|2591
6S12|1|A|A|2592
6S12|1|A|A|2593
6S12|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L14