J3_6S12_023

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

6S12|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S12_023 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.4339

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

6S12|1|A|U|1381
6S12|1|A|C|1382
6S12|1|A|G|1383
6S12|1|A|G|1384
6S12|1|A|G|1385
6S12|1|A|U|1386
6S12|1|A|C|1387
*
6S12|1|A|G|1418
6S12|1|A|A|1419
6S12|1|A|U|1420
6S12|1|A|A|1421
6S12|1|A|A|1422
*
6S12|1|A|U|1439
6S12|1|A|A|1440

Current chains

Chain A

23S ribosomal RNA

Nearby chains