3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
Length
28 nucleotides
Bulged bases
6S13|1|A|U|549, 6S13|1|A|A|553
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S13_023 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.1599
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6S13|1|A|G|30
6S13|1|A|C|31
*
6S13|1|A|G|520
6S13|1|A|U|521
6S13|1|A|G|522
6S13|1|A|A|523
6S13|1|A|A|524
6S13|1|A|A|525
6S13|1|A|A|526
6S13|1|A|G|527
6S13|1|A|C|528
6S13|1|A|A|529
6S13|1|A|C|530
*
6S13|1|A|G|541
6S13|1|A|A|542
6S13|1|A|G|543
6S13|1|A|U|544
6S13|1|A|G|545
6S13|1|A|A|546
6S13|1|A|A|547
6S13|1|A|A|548
6S13|1|A|U|549
6S13|1|A|A|550
6S13|1|A|G|551
6S13|1|A|A|552
6S13|1|A|A|553
6S13|1|A|C|554
6S13|1|A|C|555

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L20
Chain Q
50S ribosomal protein L22
Chain S
50S ribosomal protein L24

Coloring options:


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