J3_6S13_028

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S13_028 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.1345

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6S13|1|A|G|1468
6S13|1|A|G|1469
6S13|1|A|G|1470
6S13|1|A|A|1471
6S13|1|A|C|1472
6S13|1|A|G|1473
*
6S13|1|A|C|1611
6S13|1|A|C|1612
*
6S13|1|A|G|1615
6S13|1|A|A|1616
6S13|1|A|A|1617
6S13|1|A|A|1618
6S13|1|A|A|1619
6S13|1|A|G|1620
6S13|1|A|C|1621

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2