J3_6S47_004

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6S47|1|AA|A|817, 6S47|1|AA|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_004 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0665

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|U|814
6S47|1|AA|G|815
6S47|1|AA|A|816
6S47|1|AA|A|817
6S47|1|AA|C|818
6S47|1|AA|U|819
6S47|1|AA|A|820
*
6S47|1|AA|U|905
6S47|1|AA|A|906
6S47|1|AA|G|907
*
6S47|1|AA|C|923
6S47|1|AA|G|924
6S47|1|AA|A|925
6S47|1|AA|A|926

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain AP

60S ribosomal protein L15-A

Chain Al

60S ribosomal protein L37-A