3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
UGAAGUG*CAA*UCUA
Length
14 nucleotides
Bulged bases
6S47|1|AA|A|1482
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S47_008 not in the Motif Atlas
Homologous match to J3_5TBW_008
Geometric discrepancy: 0.0826
The information below is about J3_5TBW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_10154.2
Basepair signature
cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
Number of instances in this motif group
3

Unit IDs

6S47|1|AA|U|1479
6S47|1|AA|G|1480
6S47|1|AA|A|1481
6S47|1|AA|A|1482
6S47|1|AA|G|1483
6S47|1|AA|U|1484
6S47|1|AA|G|1485
*
6S47|1|AA|C|1857
6S47|1|AA|A|1858
6S47|1|AA|A|1859
*
6S47|1|AA|U|1871
6S47|1|AA|C|1872
6S47|1|AA|U|1873
6S47|1|AA|A|1874

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AT
60S ribosomal protein L19-A
Chain Ai
60S ribosomal protein L34-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4362 s