J3_6S47_011

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_011 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1705

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6S47|1|AA|C|1631
6S47|1|AA|A|1632
*
6S47|1|AA|U|1641
6S47|1|AA|A|1642
6S47|1|AA|A|1643
6S47|1|AA|C|1644
6S47|1|AA|U|1645
*
6S47|1|AA|A|1810
6S47|1|AA|G|1811

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ab

60S ribosomal protein L27-A

Chain Ai

60S ribosomal protein L34-A

Chain Am

60S ribosomal protein L38