3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
6S47|1|AA|A|2887, 6S47|1|AA|U|2888
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6S47_014 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.0732
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

6S47|1|AA|U|2886
6S47|1|AA|A|2887
6S47|1|AA|U|2888
6S47|1|AA|C|2889
*
6S47|1|AA|G|2914
6S47|1|AA|U|2915
6S47|1|AA|U|2916
*
6S47|1|AA|A|2930
6S47|1|AA|C|2931
6S47|1|AA|U|2932
6S47|1|AA|A|2933
6S47|1|AA|A|2934
6S47|1|AA|U|2935
6S47|1|AA|A|2936

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AE
60S ribosomal protein L3
Chain AQ
60S ribosomal protein L16-A
Chain AX
60S ribosomal protein L23-A

Coloring options:


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