J3_6S47_016
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 6S47|1|AB|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_016 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.0905
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6S47|1|AB|C|9
6S47|1|AB|C|10
6S47|1|AB|A|11
6S47|1|AB|U|12
6S47|1|AB|A|13
6S47|1|AB|U|14
*
6S47|1|AB|A|66
6S47|1|AB|G|67
*
6S47|1|AB|U|111
6S47|1|AB|G|112
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 60S ribosomal protein L5
- Chain AL
- 60S ribosomal protein L10
- Chain AV
- 60S ribosomal protein L21-A
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