J3_6S47_019
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6S47_019 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.0896
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|BA|A|760
6S47|1|BA|G|761
6S47|1|BA|A|762
6S47|1|BA|G|763
*
6S47|1|BA|C|773
6S47|1|BA|A|774
6S47|1|BA|G|775
*
6S47|1|BA|U|785
6S47|1|BA|C|786
6S47|1|BA|G|787
6S47|1|BA|A|788
6S47|1|BA|A|789
6S47|1|BA|U|790
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BF
- 40S ribosomal protein S4-A
- Chain BK
- 40S ribosomal protein S9-A
- Chain BZ
- 40S ribosomal protein S24-A
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