J3_6S47_022

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_022 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1228

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6S47|1|BA|C|1161
6S47|1|BA|C|1162
6S47|1|BA|A|1163
6S47|1|BA|G|1164
*
6S47|1|BA|C|1581
6S47|1|BA|U|1582
6S47|1|BA|A|1583
6S47|1|BA|G|1584
6S47|1|BA|U|1585
6S47|1|BA|A|1586
6S47|1|BA|A|1587
*
6S47|1|BA|U|1609
6S47|1|BA|G|1610
6S47|1|BA|A|1611
6S47|1|BA|U|1612
6S47|1|BA|U|1613
6S47|1|BA|A|1614
6S47|1|BA|C|1615
6S47|1|BA|G|1616

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BG

Rps5p

Chain BR

40S ribosomal protein S16-A

Chain Bd

40S ribosomal protein S28-A