J3_6S47_025

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6S47|1|BA|A|1217, 6S47|1|BA|G|1445, 6S47|1|BA|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6S47_025 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1088

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6S47|1|BA|C|1215
6S47|1|BA|C|1216
6S47|1|BA|A|1217
6S47|1|BA|G|1218
6S47|1|BA|A|1219
6S47|1|BA|C|1220
*
6S47|1|BA|G|1263
6S47|1|BA|G|1264
6S47|1|BA|G|1265
6S47|1|BA|U|1266
6S47|1|BA|G|1267
*
6S47|1|BA|U|1442
6S47|1|BA|U|1443
6S47|1|BA|A|1444
6S47|1|BA|G|1445
6S47|1|BA|A|1446
6S47|1|BA|C|1447
6S47|1|BA|G|1448

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BL

40S ribosomal protein S10-A

Chain Be

40S ribosomal protein S29-A

Chain Bg

Ubiquitin-40S ribosomal protein S31