J3_6SGC_001

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6SGC|1|54|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|112
6SGC|1|54|A|113
6SGC|1|54|G|114
6SGC|1|54|C|115
6SGC|1|54|G|116
*
6SGC|1|54|C|155
6SGC|1|54|G|156
6SGC|1|54|U|157
6SGC|1|54|A|158
6SGC|1|54|C|159
6SGC|1|54|G|160
*
6SGC|1|54|C|275
6SGC|1|54|C|276
6SGC|1|54|G|277
6SGC|1|54|G|278

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain G2

eL8

Chain L2

eL13

Chain N2

Ribosomal protein L15

Chain h2

uL29

Chain i2

60S ribosomal protein L36