J3_6SGC_005
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 6SGC|1|54|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1637
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SGC|1|54|G|1545
6SGC|1|54|C|1546
6SGC|1|54|A|1547
6SGC|1|54|G|1548
*
6SGC|1|54|C|1580
6SGC|1|54|G|1581
6SGC|1|54|U|1582
6SGC|1|54|A|1583
6SGC|1|54|G|1584
*
6SGC|1|54|U|1609
6SGC|1|54|C|1610
6SGC|1|54|C|1611
6SGC|1|54|G|1612
6SGC|1|54|A|1613
6SGC|1|54|C|1614
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain A2
- Ribosomal protein L8
- Chain R2
- eL19
- Chain g2
- eL34
- Chain p2
- eL43
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