J3_6SGC_011

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6SGC|1|54|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|A|2551
6SGC|1|54|G|2552
6SGC|1|54|A|2553
6SGC|1|54|U|2554
6SGC|1|54|G|2555
*
6SGC|1|54|C|2572
6SGC|1|54|A|2573
6SGC|1|54|G|2574
6SGC|1|54|U|2575
*
6SGC|1|54|A|2757
6SGC|1|54|G|2758
6SGC|1|54|G|2759
6SGC|1|54|G|2760
6SGC|1|54|U|2761
6SGC|1|54|G|2762
6SGC|1|54|U|2763
6SGC|1|54|A|2764
6SGC|1|54|A|2765
6SGC|1|54|A|2766
6SGC|1|54|U|2767

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Z2

60S ribosomal protein L27