J3_6SGC_016

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6SGC|1|54|A|4464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SGC_016 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.085

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6SGC|1|54|U|4463
6SGC|1|54|A|4464
6SGC|1|54|U|4465
6SGC|1|54|C|4466
*
6SGC|1|54|G|4491
6SGC|1|54|U|4492
6SGC|1|54|U|4493
*
6SGC|1|54|A|4507
6SGC|1|54|C|4508
6SGC|1|54|U|4509
6SGC|1|54|A|4510
6SGC|1|54|A|4511
6SGC|1|54|U|4512
6SGC|1|54|A|4513

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain V2

Ribosomal protein L23