J3_6SGC_020

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SGC_020 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0773

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6SGC|1|A1|A|40
6SGC|1|A1|G|41
*
6SGC|1|A1|C|481
6SGC|1|A1|G|482
6SGC|1|A1|C|483
6SGC|1|A1|A|484
6SGC|1|A1|A|485
6SGC|1|A1|A|486
6SGC|1|A1|U|487
*
6SGC|1|A1|A|512
6SGC|1|A1|G|513
6SGC|1|A1|U|514

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain Y1

uS12