J3_6SGC_026
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_026 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.0811
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|A1|U|1225
6SGC|1|A1|G|1226
6SGC|1|A1|G|1227
6SGC|1|A1|A|1228
*
6SGC|1|A1|U|1530
6SGC|1|A1|A|1531
6SGC|1|A1|C|1532
*
6SGC|1|A1|G|1638
6SGC|1|A1|G|1639
6SGC|1|A1|A|1640
6SGC|1|A1|A|1641
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain G1
- Ribosomal protein S5
- Chain R1
- Ribosomal protein S16
- Chain T1
- eS13
- Chain U1
- eS19
Coloring options: