J3_6SGC_029
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_029 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1581
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SGC|1|A1|U|1340
6SGC|1|A1|C|1341
6SGC|1|A1|U|1342
6SGC|1|A1|U|1343
6SGC|1|A1|A|1344
6SGC|1|A1|G|1345
*
6SGC|1|A1|C|1384
6SGC|1|A1|G|1385
6SGC|1|A1|A|1386
6SGC|1|A1|G|1387
6SGC|1|A1|A|1388
6SGC|1|A1|C|1389
*
6SGC|1|A1|G|1481
6SGC|1|A1|C|1482
6SGC|1|A1|A|1483
6SGC|1|A1|A|1484
6SGC|1|A1|U|1485
6SGC|1|A1|A|1486
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain D1
- uS5
- Chain E1
- uS5
- Chain R1
- Ribosomal protein S16
- Chain S1
- eS17
- Chain V1
- Ribosomal_S10 domain-containing protein
- Chain e1
- uS14
Coloring options: