J3_6SGC_030

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SGC_030 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1019

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6SGC|1|A1|U|1350
6SGC|1|A1|G|1351
*
6SGC|1|A1|U|1360
6SGC|1|A1|G|1361
6SGC|1|A1|U|1362
6SGC|1|A1|C|1363
*
6SGC|1|A1|G|1375
6SGC|1|A1|A|1376
6SGC|1|A1|U|1377
6SGC|1|A1|A|1378
6SGC|1|A1|A|1379

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain B1

uS2

Chain D1

uS5

Chain S1

eS17