J3_6SGC_034
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6SGC|1|54|U|354, 6SGC|1|54|A|362, 6SGC|1|84|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_034 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0564
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6SGC|1|54|C|351
6SGC|1|54|G|352
6SGC|1|54|A|353
6SGC|1|54|U|354
6SGC|1|54|A|355
6SGC|1|54|G|356
6SGC|1|54|U|357
6SGC|1|54|C|358
6SGC|1|54|A|359
6SGC|1|54|A|360
6SGC|1|54|C|361
6SGC|1|54|A|362
6SGC|1|54|A|363
6SGC|1|54|G|364
6SGC|1|54|U|365
6SGC|1|54|A|366
6SGC|1|54|C|367
*
6SGC|1|54|G|374
6SGC|1|54|G|375
6SGC|1|54|A|376
6SGC|1|54|A|377
6SGC|1|54|A|378
6SGC|1|54|G|379
*
6SGC|1|84|C|21
6SGC|1|84|U|22
6SGC|1|84|C|23
6SGC|1|84|G|24
Current chains
- Chain 54
- 28S ribosomal RNA
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain C2
- uL4
- Chain XX
- poly-lysine nascent chain
- Chain Y2
- Ribosomal protein L26
- Chain j2
- Ribosomal protein L37
- Chain l2
- eL39
Coloring options: