J3_6SGC_035
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6SGC|1|54|G|409, 6SGC|1|54|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_035 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.3089
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SGC|1|54|U|380
6SGC|1|54|U|381
6SGC|1|54|G|382
6SGC|1|54|A|383
6SGC|1|54|A|384
6SGC|1|54|A|385
6SGC|1|54|A|386
6SGC|1|54|G|387
6SGC|1|54|A|388
6SGC|1|54|A|389
6SGC|1|54|C|390
*
6SGC|1|54|G|401
6SGC|1|54|A|402
6SGC|1|54|G|403
6SGC|1|54|U|404
6SGC|1|54|U|405
6SGC|1|54|C|406
6SGC|1|54|A|407
6SGC|1|54|A|408
6SGC|1|54|G|409
6SGC|1|54|A|410
6SGC|1|54|G|411
6SGC|1|54|G|412
6SGC|1|54|G|413
6SGC|1|54|C|414
6SGC|1|54|G|415
*
6SGC|1|84|C|19
6SGC|1|84|A|20
Current chains
- Chain 54
- 28S ribosomal RNA
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain C2
- uL4
- Chain P2
- uL22
- Chain Y2
- Ribosomal protein L26
- Chain l2
- eL39
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