J3_6SGC_040

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

6SGC|1|54|C|4337, 6SGC|1|54|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SGC_040 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.0725

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SGC|1|54|G|4228
6SGC|1|54|U|4229
6SGC|1|54|C|4230
*
6SGC|1|54|G|4331
6SGC|1|54|C|4332
6SGC|1|54|C|4333
6SGC|1|54|U|4334
6SGC|1|54|C|4335
6SGC|1|54|A|4336
6SGC|1|54|C|4337
6SGC|1|54|G|4338
6SGC|1|54|A|4339
6SGC|1|54|U|4340
6SGC|1|54|C|4341
6SGC|1|54|C|4342
*
6SGC|1|54|G|4370
6SGC|1|54|G|4371
6SGC|1|54|U|4372
6SGC|1|54|G|4373
6SGC|1|54|U|4374
6SGC|1|54|C|4375

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Q2

eL18

Chain T2

eL21

Chain a2

Ribosomal_L18e/L15P domain-containing protein

Chain o2

eL42