J3_6SGC_042
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 6SGC|1|A1|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SGC_042 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.064
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|A1|A|40
6SGC|1|A1|G|41
6SGC|1|A1|A|42
6SGC|1|A1|U|43
6SGC|1|A1|U|44
6SGC|1|A1|A|45
6SGC|1|A1|A|46
6SGC|1|A1|G|47
*
6SGC|1|A1|C|479
6SGC|1|A1|G|480
6SGC|1|A1|C|481
6SGC|1|A1|G|482
6SGC|1|A1|C|483
6SGC|1|A1|A|484
6SGC|1|A1|A|485
6SGC|1|A1|A|486
6SGC|1|A1|U|487
*
6SGC|1|A1|A|512
6SGC|1|A1|G|513
6SGC|1|A1|U|514
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain Y1
- uS12
Coloring options: