J3_6SJ6_001

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SJ6_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.161

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6SJ6|1|A|G|30
6SJ6|1|A|C|31
*
6SJ6|1|A|G|520
6SJ6|1|A|U|521
6SJ6|1|A|G|522
6SJ6|1|A|A|523
6SJ6|1|A|A|524
6SJ6|1|A|A|525
6SJ6|1|A|A|526
6SJ6|1|A|G|527
*
6SJ6|1|A|C|554
6SJ6|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L20

Chain X

50S ribosomal protein L24