J3_6SJ6_005

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAUUG*CAAG*CUAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SJ6_005 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.3413

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6SJ6|1|A|C|1335
6SJ6|1|A|G|1336
6SJ6|1|A|A|1337
6SJ6|1|A|U|1338
6SJ6|1|A|U|1339
6SJ6|1|A|G|1340
*
6SJ6|1|A|C|1669
6SJ6|1|A|A|1670
6SJ6|1|A|A|1671
6SJ6|1|A|G|1672
*
6SJ6|1|A|C|1682
6SJ6|1|A|U|1683
6SJ6|1|A|A|1684
6SJ6|1|A|A|1685
6SJ6|1|A|G|1686

Current chains

Chain A

23S ribosomal RNA

Nearby chains