J3_6SJ6_024

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAAU*AAUCAAAGAA*UGUAG

Length

20 nucleotides

Bulged bases

6SJ6|1|A|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SJ6_024 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.161

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6SJ6|1|A|C|340
6SJ6|1|A|G|341
6SJ6|1|A|A|342
6SJ6|1|A|A|343
6SJ6|1|A|U|344
*
6SJ6|1|A|A|359
6SJ6|1|A|A|360
6SJ6|1|A|U|361
6SJ6|1|A|C|362
6SJ6|1|A|A|363
6SJ6|1|A|A|364
6SJ6|1|A|A|365
6SJ6|1|A|G|366
6SJ6|1|A|A|367
6SJ6|1|A|A|368
*
6SJ6|1|A|U|380
6SJ6|1|A|G|381
6SJ6|1|A|U|382
6SJ6|1|A|A|383
6SJ6|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain X

50S ribosomal protein L24