J3_6SJ6_025

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6SJ6|1|A|C|1651, 6SJ6|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SJ6_025 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.3077

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6SJ6|1|A|C|1342
6SJ6|1|A|U|1343
6SJ6|1|A|A|1344
6SJ6|1|A|A|1345
6SJ6|1|A|G|1346
*
6SJ6|1|A|C|1649
6SJ6|1|A|G|1650
6SJ6|1|A|C|1651
6SJ6|1|A|A|1652
6SJ6|1|A|A|1653
6SJ6|1|A|A|1654
6SJ6|1|A|C|1655
*
6SJ6|1|A|G|1664
6SJ6|1|A|U|1665
6SJ6|1|A|A|1666
6SJ6|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34