J3_6SKF_012
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GC*GAUAAGC*GAUGC
- Length
- 14 nucleotides
- Bulged bases
- 6SKF|1|BA|A|83
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKF_012 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0976
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
6SKF|1|BA|G|65
6SKF|1|BA|C|66
*
6SKF|1|BA|G|79
6SKF|1|BA|A|80
6SKF|1|BA|U|81
6SKF|1|BA|A|82
6SKF|1|BA|A|83
6SKF|1|BA|G|84
6SKF|1|BA|C|85
*
6SKF|1|BA|G|118
6SKF|1|BA|A|119
6SKF|1|BA|U|120
6SKF|1|BA|G|121
6SKF|1|BA|C|122
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BW
- 50S ribosomal protein L23
- Chain BZ
- 50S ribosomal protein L29
- Chain Bh
- 50S ribosomal protein L37e
- Chain Bi
- 50S ribosomal protein L39e
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