J3_6SKF_023

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CC*GUUGAU*AACAG

Length

13 nucleotides

Bulged bases

6SKF|1|BA|U|2959, 6SKF|1|BA|A|2961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKF_023 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.2393

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6SKF|1|BA|C|2940
6SKF|1|BA|C|2941
*
6SKF|1|BA|G|2957
6SKF|1|BA|U|2958
6SKF|1|BA|U|2959
6SKF|1|BA|G|2960
6SKF|1|BA|A|2961
6SKF|1|BA|U|2962
*
6SKF|1|BA|A|3016
6SKF|1|BA|A|3017
6SKF|1|BA|C|3018
6SKF|1|BA|A|3019
6SKF|1|BA|G|3020

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L31e