J3_6SKF_036
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUCG*CGAU(A2M)GCGAACUAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6SKF|1|BA|C|43, 6SKF|1|BA|U|487, 6SKF|1|BA|U|495
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKF_036 not in the Motif Atlas
- Homologous match to J3_4V9F_013
- Geometric discrepancy: 0.2142
- The information below is about J3_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
6SKF|1|BA|C|41
6SKF|1|BA|U|42
6SKF|1|BA|C|43
6SKF|1|BA|G|44
*
6SKF|1|BA|C|484
6SKF|1|BA|G|485
6SKF|1|BA|A|486
6SKF|1|BA|U|487
6SKF|1|BA|A2M|488
6SKF|1|BA|G|489
6SKF|1|BA|C|490
6SKF|1|BA|G|491
6SKF|1|BA|A|492
6SKF|1|BA|A|493
6SKF|1|BA|C|494
6SKF|1|BA|U|495
6SKF|1|BA|A|496
6SKF|1|BA|G|497
6SKF|1|BA|U|498
6SKF|1|BA|A|499
6SKF|1|BA|C|500
*
6SKF|1|BA|G|507
6SKF|1|BA|G|508
6SKF|1|BA|A|509
6SKF|1|BA|A|510
6SKF|1|BA|A|511
6SKF|1|BA|G|512
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BX
- 50S ribosomal protein L24
- Chain Bh
- 50S ribosomal protein L37e
- Chain Bi
- 50S ribosomal protein L39e
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