J3_6SKF_038
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- C(A2M)G*(4AC)GCUAG*CGUG
- Length
- 13 nucleotides
- Bulged bases
- 6SKF|1|BA|C|860
- QA status
- Modified nucleotides: A2M, 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKF_038 not in the Motif Atlas
- Homologous match to J3_4V9F_003
- Geometric discrepancy: 0.1178
- The information below is about J3_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.1
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6SKF|1|BA|C|824
6SKF|1|BA|A2M|825
6SKF|1|BA|G|826
*
6SKF|1|BA|4AC|858
6SKF|1|BA|G|859
6SKF|1|BA|C|860
6SKF|1|BA|U|861
6SKF|1|BA|A|862
6SKF|1|BA|G|863
*
6SKF|1|BA|C|888
6SKF|1|BA|G|889
6SKF|1|BA|U|890
6SKF|1|BA|G|891
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
- Chain BS
- 50S ribosomal protein L19e
- Chain Be
- 50S ribosomal protein L34e
- Chain Bg
- 50S ribosomal protein L37Ae
Coloring options: